A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
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Dec 5, 2023
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methylation-microarrays
Here are 16 public repositories matching this topic...
Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
python methylation epigenetics illumina methylation-microarrays cnv umap minfi tumor-classification conumee methylation-extractor methylation-analysis methylation-plot
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Jan 5, 2026 - Python
This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.
bioinformatics mouse methylation methylation-microarrays illumina-beadarrays illumina-bead-chip methylation-analysis methylation-annotation
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Jul 11, 2024 - R
Regional Association of DNA Methylome variability with the Exposome and geNome (RAMEN) is an R package which goal is to identify Variable Methylated Loci (VML) in microarray DNA methylation data. Then, using genome (G) and exposome (E) data, it can identify which individual (G or E) or joint (G+E or GxE) model better explains the VML variability.
genome r-package dna-methylation methylation-microarrays bioinformatics-tool exposome multiomics methylation-analysis
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Jan 15, 2026 - R
Gaussian mixture modelling - Unsupervised learning
unsupervised clustering uncertainty methylation gaussian expectation-maximization parameter-estimation unsupervised-learning probes em mixture-model propagation mixture-modeling methylation-microarrays principal-component-analysis loci affinity unsupervised-machine-learning affinity-propagation cpgs
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Apr 5, 2017 - R
Methylation Array Cross-Reactive Probes
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Oct 19, 2018 - R
📦 🔬 R/methyvim: Targeted, Robust, and Model-free Differential Methylation Analysis
machine-learning bioinformatics r statistics variable-importance computational-biology biostatistics bioconductor dna-methylation targeted-learning bioconductor-packages methylation-microarrays causal-inference bioconductor-package
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Apr 28, 2020 - TeX
Epicopy R package for CNV identification from methylation microarrays.
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Sep 19, 2017 - R
An annotation for mapping cpgs on the EPIC DNA methylation microarray platform to genomic features.
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Jan 8, 2020
📦 Bioconductor data package associated with the methyvim R package
bioinformatics r dataset biostatistics bioconductor bioconductor-packages methylation-microarrays methyl-seq
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Nov 2, 2017 - R
generates reference matrix of average beta methylation values
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Jan 30, 2018 - Python
Detection of rare aberrantly methylated regions / epimutations in array and NGS data — an R/Bioc package
next-generation-sequencing bioconductor dna-methylation methylation-microarrays aberrant-methylation epimutation
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Jul 6, 2025 - R
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Sep 26, 2017 - R
MONTE:Methylation-based Observation Normalizationand Tumor purity Estimation
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Jan 24, 2026 - Python
MONTE:Methylation-based Observation Normalizationand Tumor purity Estimation
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Jan 26, 2026 - Python
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