🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations

Extraction of COG functional classes and save the data in csv format

Scripts created for my final degree project in the Biotechnology Grade at the Technical University of Madrid (UPM) during the 2022/23 course..

Orthologs Databases — Archive of bioinformatics databases and PHP processing pipelines for cross-species ortholog analysis across 7 model organisms (2012-2016). Integrates data from 21 sources including HomoloGene, InParanoid, OrthoMCL, eggNOG, BioGRID, STRING, Gene Ontology, KEGG, and Reactome.

A genomic toolkit for sliding-window GC content/skew circular mapping, XLSX-to-FASTA protein extraction, and EggNOG-mapper results parsing for functional category distribution. Provides automated, high-resolution visualization for bacterial genomes. Post-analysis for Genomics NGS Analysis Team 新北市汐止區新台五路 (Taiwan © 2017-2018 Genomics)

The PanKEGG Flask application is a web-based tool for visualizing, comparing, and exporting metagenomic data related to taxonomy and pathways.

Annotate the ruff sandpiper (Calidris pugnax) reference proteome with GO, KEGG, PFAM and other information using various bioinformatics tools and databases.