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1. mutation-browser mutation-browser Public

   Full‑stack mutation browser using PostgreSQL, Flask, React, Celery, RabbitMQ and Kubernetes (Minikube).

   Python

2. oncoinfer-ai oncoinfer-ai Public

   OncoInfer is a stateless Flask-based web API with a React frontend for ML & deep-learning-based tumor type prediction from clinical genomic data, designed for oncology healthcare workflows.

   JavaScript

3. mmdarmofal/GDD_ENS mmdarmofal/GDD_ENS Public

   Tumor type classifier using cancer genomic panel sequencing data

   R 12 7

4. Penguin Penguin Public

   Forked from mskcc/Penguin

   Scalable, reproducible, end-to-end pipeline for ecDNA biomarker detection from tumor sequencing data, integrating workflow orchestration, structured data models & front-end tooling for clinical tri…

   Jupyter Notebook

5. react-vite-csv-mutation-json-converter react-vite-csv-mutation-json-converter Public

   Client-side CSV-to-JSON converter for structured data built with React and Vite.

   JavaScript

6. variantCallingPipelineGermlineHC4 variantCallingPipelineGermlineHC4 Public

   Germline Variant CallHigh-throughput, scalable variant calling pipeline built in Snakemake, designed for reproducible analysis of large-scale sequencing data.ing Pipeline

   Python 1