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@populationgenomics

Centre for Population Genomics

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  1. talos talos Public

    Rare Disease variant reanalysis tool

    Python 26 12

  2. production-pipelines production-pipelines Public

    Genomics workflows for CPG using Hail Batch

    Python 12 2

  3. saige-tenk10k saige-tenk10k Public

    Hail batch pipeline to run SAIGE on CPG's GCP

    Python 7 1

  4. cpg-cost-control cpg-cost-control Public

    A Cloud Function to handle GCP billing budget notifications.

    Python 6 3

  5. cuKING cuKING Public

    CUDA-based KING relatedness estimation

    Cuda 5

  6. ClinvArbitration ClinvArbitration Public

    A side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the CPG

    Python 5 3

Repositories

Showing 10 of 96 repositories
  • talos Public

    Rare Disease variant reanalysis tool

    populationgenomics/talos’s past year of commit activity
    Python 26 MIT 12 12 4 Updated Feb 11, 2026
  • metamist Public

    Sample level metadata system

    populationgenomics/metamist’s past year of commit activity
    Python 3 MIT 2 40 32 Updated Feb 11, 2026
  • images Public

    Reusable single-software docker images

    populationgenomics/images’s past year of commit activity
    Dockerfile 1 MIT 2 1 10 Updated Feb 11, 2026
  • sv-workflows Public

    Structural Variation Workflows

    populationgenomics/sv-workflows’s past year of commit activity
    Python 2 MIT 1 2 5 Updated Feb 11, 2026
  • talos_af Public

    A Talos-like tool for identifying ACMG Actionable Findings in large cohorts

    populationgenomics/talos_af’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 10, 2026
  • populationgenomics/cpg-flow-rdrnaseq’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Feb 10, 2026
  • references Public

    Reference data for bioinformatics workflows

    populationgenomics/references’s past year of commit activity
    Python 1 MIT 2 4 3 Updated Feb 10, 2026
  • populationgenomics/cpg-flow-seqr-loader’s past year of commit activity
    Python 0 MIT 0 1 4 Updated Feb 10, 2026
  • rare-disease Public

    A collection of scripts relating to rare-disease specific projects

    populationgenomics/rare-disease’s past year of commit activity
    Python 2 MIT 1 0 1 Updated Feb 9, 2026
  • cpg-flow-gcnv Public

    CPG-Flow implementation of the CPG gCNV Exome SV calling workflow

    populationgenomics/cpg-flow-gcnv’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 9, 2026

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