Update catalog to Haddock3 2026-02-18

.github/workflows/node.js.yml

@@ -15,7 +15,7 @@ jobs:
     steps:
     - uses: actions/checkout@v2
     - name: Use Node.js
-      uses: actions/setup-node@v2
+      uses: actions/setup-node@v6
       with:
         node-version: 18.x
         cache: 'yarn'

.github/workflows/pages.yml

@@ -31,7 +31,7 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v3
       - name: Use Node.js
-        uses: actions/setup-node@v2
+        uses: actions/setup-node@v6
         with:
           node-version: 18.x
           cache: "yarn"

apps/haddock3-download/integration-tests/dupheader.spec.ts

@@ -27,7 +27,7 @@ test.describe('given an uploaded archive with a workflow.cfg file with a duplica
 
   test('it should show uplaoded file', async ({ page }) => {
     // Click Files tab
-    await page.locator('text=Files').click()
+    await page.locator('button:has-text("Files")').click()
     // validate file button is present
     await page.waitForSelector('button:has-text("some.pdb")')
   })

apps/haddock3-download/integration-tests/syntaxhighlighter.spec.ts

@@ -10,7 +10,7 @@ test('Verify that [object Object] bug does not show up (issue #74)', async ({ pa
   await page.locator('text=docking-protein-ligand').click()
 
   // validate that file is used
-  await page.locator('text=Files').click()
+  await page.locator('button:has-text("Files")').click()
   await page.waitForSelector('button:has-text("data/target.pdb")')
 
   // change to 'text' tab

apps/haddock3-download/integration-tests/topoaamol.spec.ts

@@ -74,7 +74,7 @@ test.describe('given 1 molecule and a topoaa node', () => {
           .setInputFiles({ name: 'workflow.zip', mimeType: 'application/zip', buffer: file1 })
 
         // ensure file is uploaded
-        await page.locator('text=Files').click()
+        await page.locator('button:has-text("Files")').click()
         await page.waitForSelector('button:has-text("e2a-hpr_1GGR.pdb")')
       })
 

apps/haddock3-download/package.json

@@ -18,7 +18,7 @@
     "react-dom": "^17.0.0"
   },
   "devDependencies": {
-    "@playwright/test": "^1.22.1",
+    "@playwright/test": "^1.45.0",
     "@types/adm-zip": "^0.5.0",
     "@types/node": "16",
     "@types/react": "^17.0.0",

apps/haddock3-download/tsconfig.json

@@ -4,7 +4,7 @@
     "useDefineForClassFields": true,
     "lib": ["DOM", "DOM.Iterable", "ESNext"],
     "allowJs": false,
-    "skipLibCheck": false,
+    "skipLibCheck": true,
     "esModuleInterop": false,
     "allowSyntheticDefaultImports": true,
     "strict": true,

packages/haddock3_catalog/generate_haddock3_catalog.py

@@ -392,12 +392,18 @@ def config2schema(config):
                 prop['items'] = {
                     "type": "number"
                 }
-            elif k == 'ligand_chains':
+            elif k == 'ligand_chains' or k == 'chains':
                 prop['items'] = {
                     "type": "string",
                     "format": "chain"
                 }
                 prop['default'] = v['default']
+            elif k == 'interface_combinations':
+                # For emscoring module
+                prop['items'] = {
+                    "type": "string"
+                }
+                prop['default'] = v['default']
             else:
                 raise ValueError(f"Don't know how to determine type of items of {v}")
         else: