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@genepattern

GenePattern

A Platform for Reproducible Bioinformatics

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  1. genepattern-notebook genepattern-notebook Public

    Platform for integrating genomic analysis with Jupyter Notebooks.

    Python 44 13

  2. genepattern-server genepattern-server Public

    The GenePattern Server web application

    HTML 37 19

  3. genepattern-python genepattern-python Public

    GenePattern Python Library

    Python 11 4

Repositories

Showing 10 of 256 repositories
  • module-toolkit Public
    genepattern/module-toolkit’s past year of commit activity
    Python 0 BSD-3-Clause 3 4 1 Updated Feb 13, 2026
  • mutect2 Public Forked from garvit192/Genepattern-mutect2

    This is a python based tool used to call and run GATK Mutect2 in Genepattern

    genepattern/mutect2’s past year of commit activity
    Python 0 1 0 0 Updated Jan 14, 2026
  • genepattern-server Public

    The GenePattern Server web application

    genepattern/genepattern-server’s past year of commit activity
    HTML 37 19 0 4 Updated Jan 9, 2026
  • common_module_code Public

    This repository contains the shared code used by the GenePattern modules.

    genepattern/common_module_code’s past year of commit activity
    0 0 0 0 Updated Jan 9, 2026
  • genepattern-website Public

    GenePattern website and associated scripts

    genepattern/genepattern-website’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 6, 2026
  • tfsites.NormalizeTfDNAAffinityData Public

    Farley lab UCSD collaboration

    genepattern/tfsites.NormalizeTfDNAAffinityData’s past year of commit activity
    0 0 0 0 Updated Dec 22, 2025
  • tfsites.PerturbTfSiteWithoutSideEffects Public
    genepattern/tfsites.PerturbTfSiteWithoutSideEffects’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Dec 10, 2025
  • tfsites.CompareAcrossSeqsFromDNA Public

    Compares the two seqs and reports the binding site effect on diff seqs

    genepattern/tfsites.CompareAcrossSeqsFromDNA’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Dec 8, 2025
  • tfsites.common_docker Public

    Docker container for all the Farley lab tfsites suite of modules

    genepattern/tfsites.common_docker’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 8, 2025
  • AmpliconSuite Public Forked from edwin5588/paa_custom

    Wraps the AmpliconSuite-pipeline workflow to identify one or more connected genomic regions which have copy number amplifications.

    genepattern/AmpliconSuite’s past year of commit activity
    Python 1 1 0 0 Updated Dec 5, 2025
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