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@gear-genomics

GEAR

Genome Analysis Server

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  1. tracy tracy Public

    Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

    C++ 121 23

  2. dicey dicey Public

    In-silico PCR, primer design and padlock design for in-situ sequencing

    C++ 53 4

  3. indigo indigo Public

    Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

    JavaScript 36 9

  4. wily-dna-editor wily-dna-editor Public

    The Wily-DNA-Editor is a browser tool for plasmid assembly, reverse complements DNA, translates to protein code and calculates restriction digests maps.

    JavaScript 15 1

  5. silica silica Public

    In-silico PCR amplification on complete genomes

    JavaScript 11 1

  6. teal teal Public

    Sanger Trace Viewer

    JavaScript 10 2

Repositories

Showing 10 of 24 repositories
  • saint Public

    [WIP] saint (similarity hunter): Rapid DNA similarity search against entire genomes.

    gear-genomics/saint’s past year of commit activity
    JavaScript 4 1 0 1 Updated Feb 11, 2026
  • ancient Public

    Ancestry inference with convolutional neural networks

    gear-genomics/ancient’s past year of commit activity
    Vue 9 GPL-3.0 2 0 0 Updated Feb 11, 2026
  • apps-page Public

    GEAR home page

    gear-genomics/apps-page’s past year of commit activity
    Vue 2 0 0 0 Updated Feb 4, 2026
  • sabre Public

    Sequence Alignment Browser

    gear-genomics/sabre’s past year of commit activity
    JavaScript 7 GPL-3.0 1 0 0 Updated Jan 23, 2026
  • gearlog Public
    gear-genomics/gearlog’s past year of commit activity
    Python 0 0 0 0 Updated Jan 22, 2026
  • dicey Public

    In-silico PCR, primer design and padlock design for in-situ sequencing

    gear-genomics/dicey’s past year of commit activity
    C++ 53 GPL-3.0 4 3 0 Updated Jan 12, 2026
  • padlock Public

    Design padlock probes for in-situ sequencing

    gear-genomics/padlock’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Jan 12, 2026
  • bistro Public

    bistro: barcode distribution

    gear-genomics/bistro’s past year of commit activity
    HTML 2 GPL-3.0 2 0 0 Updated Dec 29, 2025
  • maze Public Forked from mhyfritz/maze

    maze: match visualizer | visually align dna sequences using exact matches

    gear-genomics/maze’s past year of commit activity
    JavaScript 0 MIT 1 0 0 Updated Dec 28, 2025
  • bgen Public

    Barcode Generator

    gear-genomics/bgen’s past year of commit activity
    JavaScript 3 GPL-3.0 2 0 0 Updated Dec 27, 2025