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  1. DNA_replication_model DNA_replication_model Public

    Toolkit for analyzing DNA replication timing, origin firing rates, and genomic stability across cell lines and chromosome regions. It includes functions for data processing and visualization for wh…

    Jupyter Notebook

  2. MultiLayer-NotchDelta MultiLayer-NotchDelta Public

    Toolkit for modelling and analysing 3D Notch-Delta signalling in multi-layered epithelial tissues, aimed at exploring how cell geometry and depth affect lateral inhibition.

    Jupyter Notebook

  3. Notch-Delta-Coupling Notch-Delta-Coupling Public

    Source code for "Coupling dynamics of 2D Notch-Delta signalling", by Francisco Berkemeier and Karen M. Page

    Mathematica

  4. Pfuderer/ORILINX Pfuderer/ORILINX Public

    A genome language model to detect origin of replication sequences across multiple species.

    Python 2