Skip to content
View exTerEX's full-sized avatar

Highlights

  • Pro

Block or report exTerEX

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
exterex/README.md

Hey there! πŸ‘‹ I'm exterex

🧬 PhD Researcher in Molecular Microbiology

GitHub followers


About Me

I'm a PhD candidate passionate about unraveling the mysteries of bacterial communication, gene regulation and mutagenesis. My research sits at the fascinating intersection of molecular biology and computational approaches.

  • πŸŽ“ Currently working on my PhD thesis in molecular microbiology
  • 🦠 Investigating the molecular mechanisms of competence regulation and genetic transformation in oral Streptococci
  • πŸ’» Building computational tools to accelerate in vitro discovery
  • πŸ§ͺ Bridging the gap between wet lab experiments and data analysis

πŸ”¬ Research Focus

Focus Description
🧫 Bacterial Signaling Quorum sensing and peptide-mediated communication in microbial communities
🧬 Genetic Transformation Mechanisms of horizontal gene transfer and DNA uptake in bacteria
πŸ§ͺ Mutagenesis Studying mutation pathways and their role in bacterial adaptation
πŸ’Š Antimicrobial Resistance Understand the relative weight of each adaptation mechanism's role in AMR propagation
🦷 Oral Streptococci Streptococci is a commensal pathogenic bacteria with rising frequency of AMR caused by its adaptability by both genetic transformation and mutagenesis

πŸ› οΈ Tech Stack

Python R Bash Git Opensuse Scipy Githubcopilot Pytorch Nfcore Dependabot QEMU Pypy Codacy Ruff Scaleway Nextcloud cplusplus Pandas Astral Debian Opencv Pycqa UV Bioconductor Githubpages Scikitlearn Pytest Anaconda Githubactions Mistralai c Github Suse Rstudioide Googlegemini Pypi


🌱 Current Goals

  • πŸ“ Complete and defend my PhD thesis
  • πŸš€ Develop open-source tools for microbiology research
  • 🀝 Collaborate with fellow researchers on exciting projects
  • πŸ“– Share knowledge through scientific publications

πŸ’¬ Let's Connect!

Always open to discussions about microbiology, bioinformatics, or potential collaborations.

Pinned Loading

  1. scikit-bio/scikit-bio scikit-bio/scikit-bio Public

    scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

    Python 1.2k 303

  2. noaa noaa Public

    Python API for NOAA climate data

    Python 6 1

  3. kmeans kmeans Public

    A C implementation of K-Means clustering algorithm with Python bindings

    C 1

  4. wsldots wsldots Public

    Personal dotfiles for Windows Subsystems for Linux (WSL)

    Shell 4 1

  5. GeneTicker GeneTicker Public

    A small utility for calculating codon frequencies from GenBank (GBFF) files.

    Python

  6. bioscripts bioscripts Public

    A collection of easy to use scripts I have developed during my PhD for pre- and post-processing of biological data.

    Python