feat: update typeline and support Python 3.13

.github/workflows/publish_bedspec.yml

@@ -5,7 +5,8 @@ on:
     tags: '[0-9]+.[0-9]+.[0-9]+'
 
 env:
-  POETRY_VERSION: 1.6
+  POETRY_VERSION: 2.1.1
+
 
 jobs:
   on-main-branch-check:
@@ -48,10 +49,11 @@ jobs:
         with:
           python-version: 3.12
 
-      - name: Install poetry
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install poetry==${{env.POETRY_VERSION}}
+      - name: Install and configure Poetry
+        uses: snok/install-poetry@v1
+        with:
+          version: ${{ env.POETRY_VERSION }}
+          installer-parallel: true
 
       - name: Configure poetry
         shell: bash

.github/workflows/tests.yml

@@ -9,14 +9,14 @@ on:
   workflow_call:
 
 env:
-  POETRY_VERSION: 1.8
+  POETRY_VERSION: 2.1.1
 
 jobs:
   Tests:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        PYTHON_VERSION: ["3.10", "3.11", "3.12"]
+        PYTHON_VERSION: ["3.10", "3.11", "3.12", "3.13"]
     steps:
       - uses: actions/checkout@v4
 
@@ -30,10 +30,11 @@ jobs:
         shell: bash
         run: echo "version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))")" >> $GITHUB_OUTPUT
 
-      - name: Install poetry
-        run: |
-          python -m pip install --upgrade pipx
-          pipx install poetry==${{env.POETRY_VERSION}}
+      - name: Install and configure Poetry
+        uses: snok/install-poetry@v1
+        with:
+          version: ${{ env.POETRY_VERSION }}
+          installer-parallel: true
 
       - name: Set up cache
         uses: actions/cache@v4
@@ -50,8 +51,5 @@ jobs:
       - name: Install the library
         run: poetry install -v
 
-      - name: Install the task runner poethepoet
-        run: poetry self add 'poethepoet[poetry_plugin]'
-
       - name: Test the library
         run: poetry task check-all

.github/workflows/wheels.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        PYTHON_VERSION: ["3.10", "3.11", "3.12"]
+        PYTHON_VERSION: ["3.10", "3.11", "3.12", "3.13"]
 
     steps:
       - uses: actions/checkout@v4

CONTRIBUTING.md

@@ -40,24 +40,6 @@ poetry check --lock
 
 ## Shortcut Task Commands
 
-To be able to run shortcut task commands, first install the Poetry plugin [`poethepoet`](https://poethepoet.natn.io/index.html):
-
-```console
-poetry self add 'poethepoet[poetry_plugin]'
-```
-
-> [!NOTE]
-> Upon the release of Poetry [v2.0.0](https://github.com/orgs/python-poetry/discussions/9793#discussioncomment-11043205), Poetry will automatically support bootstrap installation of [project-specific plugins](https://github.com/python-poetry/poetry/pull/9547) and installation of the task runner will become automatic for this project.
-> The `pyproject.toml` syntax will be:
-> 
-> ```toml
-> [tool.poetry]
-> requires-poetry = ">=2.0"
-> 
-> [tool.poetry.requires-plugins]
-> poethepoet = ">=0.29"
-> ```
-
 ### For Running Individual Checks
 
 ```console

README.md

@@ -2,7 +2,7 @@
 
 [![PyPi Release](https://badge.fury.io/py/bedspec.svg)](https://badge.fury.io/py/bedspec)
 [![CI](https://github.com/clintval/bedspec/actions/workflows/tests.yml/badge.svg?branch=main)](https://github.com/clintval/bedspec/actions/workflows/tests.yml?query=branch%3Amain)
-[![Python Versions](https://img.shields.io/badge/python-3.10_|_3.11_|_3.12-blue)](https://github.com/clintval/typeline)
+[![Python Versions](https://img.shields.io/badge/python-3.10_|_3.11_|_3.12_|_3.13-blue)](https://github.com/clintval/typeline)
 [![basedpyright](https://img.shields.io/badge/basedpyright-checked-42b983)](https://docs.basedpyright.com/latest/)
 [![mypy](https://www.mypy-lang.org/static/mypy_badge.svg)](https://mypy-lang.org/)
 [![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/)

bedspec/_reader.py

@@ -6,7 +6,7 @@
 from typing import get_args
 from typing import get_origin
 
-from typeline import TsvRecordReader
+from typeline import TsvReader
 from typing_extensions import Self
 from typing_extensions import override
 
@@ -17,7 +17,7 @@
 from bedspec._bedspec import BedType
 
 
-class BedReader(TsvRecordReader[BedType]):
+class BedReader(TsvReader[BedType]):
     """A reader of BED records."""
 
     @override

bedspec/_writer.py

@@ -1,14 +1,14 @@
 from typing import Any
 
-from typeline import TsvRecordWriter
+from typeline import TsvWriter
 from typing_extensions import override
 
 from bedspec._bedspec import COMMENT_PREFIXES
 from bedspec._bedspec import BedColor
 from bedspec._bedspec import BedType
 
 
-class BedWriter(TsvRecordWriter[BedType]):
+class BedWriter(TsvWriter[BedType]):
     """A writer for writing dataclasses into BED text data."""
 
     @override