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chooliu/README.md

PhD Bioinformatics student. Interests in spatial/single-cell epigenetics, multi-'omics, & statistical genetics.

About Me: ☀️ chooliu.github.io

Google Scholar: Google Scholar

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  1. snmCTseq_Pipeline snmCTseq_Pipeline Public

    Luo Lab snmCT-seq bioinformatics pipeline for joint single-nucleus methylation & transcriptome profiles.

    Jupyter Notebook 7

  2. snm3Cseq_Pipeline snm3Cseq_Pipeline Public

    bioinformatics pipeline for single-nucleus methylation & chromatin conformation capture assay (sn-m3C-seq)

    Jupyter Notebook 3

  3. KechrisLab/miR-MaGiC KechrisLab/miR-MaGiC Public

    miRNA quantification from small RNA-seq

    Java 9 5

  4. FetalLung_miRNA_SmokeExposure FetalLung_miRNA_SmokeExposure Public

    analysis code for "Intrauterine Smoke Exposure, microRNA Expression during Human Lung Development, and Childhood Asthma"

    R

  5. Ghoshlab/RZV_CMI_5YrPersist Ghoshlab/RZV_CMI_5YrPersist Public

    Analysis code for "Cell-Mediated Immune Responses After Administration Of The Live Or The Recombinant Zoster Vaccine: Five-Year Persistence"

    R

  6. ARCA_scRNAseq_Doublet_Detection ARCA_scRNAseq_Doublet_Detection Public

    Absolute RNA Content Aware (ARCA) doublet detection in scRNA-seq data