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Destrand per chrom#365

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alexg9010 wants to merge 4 commits intomasterfrom
destrand_per_chrom
Open

Destrand per chrom#365
alexg9010 wants to merge 4 commits intomasterfrom
destrand_per_chrom

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This PR changes destranding to per chromosome processing instead of chunkwise processing.
This addresses several issues reported with the error message [E::hts_idx_push] Chromosome blocks not continuous.

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