Fixed bug in command line tool with option --optimise which resulted …#44

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hpon wants to merge 3 commits intoSCCAF:developfrom

teamsoranzo:develop

Commits on Mar 9, 2021

Fixed bug in command line tool with option --optimise which resulted in Louvain clustering being run ignoring options --slot-for-existing-clustering and --external-clustering-tsv.
hpon
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Commits on May 20, 2021