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Baum-Welch learning.py
Baum-Welch learning.py
 
 
De Bruijin Graph of a string.py
De Bruijin Graph of a string.py
 
 
De Bruijin Graph of kmers.py
De Bruijin Graph of kmers.py
 
 
De Bruijn Graph.py
De Bruijn Graph.py
 
 
GC.py
GC.py
 
 
HMM_likelihood.py
HMM_likelihood.py
 
 
HMM_profile.py
HMM_profile.py
 
 
HMM_profile_pseudocounts.py
HMM_profile_pseudocounts.py
 
 
Motzkin number.py
Motzkin number.py
 
 
N50&N70.py
N50&N70.py
 
 
PSM search.py
PSM search.py
 
 
README.md
README.md
 
 
_config.yml
_config.yml
 
 
aa_mass.py
aa_mass.py
 
 
alignment.py
alignment.py
 
 
character table from strings.py
character table from strings.py
 
 
character table.py
character table.py
 
 
character-based tree.py
character-based tree.py
 
 
codon.txt
codon.txt
 
 
complete tree.py
complete tree.py
 
 
consensus.py
consensus.py
 
 
counting alignment.py
counting alignment.py
 
 
cyclic genome assembly.py
cyclic genome assembly.py
 
 
disjoint motifs.py
disjoint motifs.py
 
 
distance matrix.py
distance matrix.py
 
 
edit distance.py
edit distance.py
 
 
enumerate unrooted trees.py
enumerate unrooted trees.py
 
 
estimate_HMM_parameters.py
estimate_HMM_parameters.py
 
 
fibonacci_rabbit.py
fibonacci_rabbit.py
 
 
find approximate patterns.py
find approximate patterns.py
 
 
find pattern in text.py
find pattern in text.py
 
 
frequency array.py
frequency array.py
 
 
frequent words in string.py
frequent words in string.py
 
 
gene_order permutation.py
gene_order permutation.py
 
 
genome assembly using reads.py
genome assembly using reads.py
 
 
genome assembly.py
genome assembly.py
 
 
global alignment - constant gap penalty.py
global alignment - constant gap penalty.py
 
 
global alignment.py
global alignment.py
 
 
ideal spectrum.py
ideal spectrum.py
 
 
inconsistence_character.py
inconsistence_character.py
 
 
independent segregation.py
independent segregation.py
 
 
independent_alleles combination.py
independent_alleles combination.py
 
 
infer mRNA from protein.py
infer mRNA from protein.py
 
 
k-mer.py
k-mer.py
 
 
kmer from string.py
kmer from string.py
 
 
lexicographical_order.py
lexicographical_order.py
 
 
linguistic_complex.py
linguistic_complex.py
 
 
longest common subsequence.py
longest common subsequence.py
 
 
longest increasing subseq.py
longest increasing subseq.py
 
 
longest multiple repeats.py
longest multiple repeats.py
 
 
match spectrum to protein.py
match spectrum to protein.py
 
 
math.py
math.py
 
 
median string.py
median string.py
 
 
min GC skew.py
min GC skew.py
 
 
mortal_rabbit.py
mortal_rabbit.py
 
 
motif finding kmp.py
motif finding kmp.py
 
 
orf.py
orf.py
 
 
oriented gene order.py
oriented gene order.py
 
 
overlap graph.py
overlap graph.py
 
 
overlap_graph.py
overlap_graph.py
 
 
pattern clusters.py
pattern clusters.py
 
 
pattern in text.py
pattern in text.py
 
 
pattern matching.py
pattern matching.py
 
 
pattern string distance.py
pattern string distance.py
 
 
peptide_vector.py
peptide_vector.py
 
 
profile prob kmer.py
profile prob kmer.py
 
 
protein from full spectrum.py
protein from full spectrum.py
 
 
protein from spectrum.py
protein from spectrum.py
 
 
protein_motif.py
protein_motif.py
 
 
proteome spectrum.py
proteome spectrum.py
 
 
quartet.py
quartet.py
 
 
reads error.py
reads error.py
 
 
restriction_site.py
restriction_site.py
 
 
reversal distance.py
reversal distance.py
 
 
reversal sort.py
reversal sort.py
 
 
rna_splicing.py
rna_splicing.py
 
 
sequence peptide.py
sequence peptide.py
 
 
set.py
set.py
 
 
shared_motif.py
shared_motif.py
 
 
shortest common supersequence.py
shortest common supersequence.py
 
 
soft decoding.py
soft decoding.py
 
 
spectral convolution.py
spectral convolution.py
 
 
spectrum graph.py
spectrum graph.py
 
 
spliced motif.py
spliced motif.py
 
 
split distance.py
split distance.py
 
 
str of varying len lexicographically.py
str of varying len lexicographically.py
 
 
string from graph.py
string from graph.py
 
 
transition vs tranversion.py
transition vs tranversion.py
 
 
translation.py
translation.py
 
 
tree distances.py
tree distances.py
 
 
vector_peptide.py
vector_peptide.py
 
 
viterbi learning.py
viterbi learning.py
 
 
viterbi.py
viterbi.py
 
 
wobble bonding.py
wobble bonding.py
 
 

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