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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 3.3k 384

  2. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 514 142

  3. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 492 49

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 149 31

  5. cell-eval cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 122 41

  6. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 120 11

Repositories

Showing 10 of 31 repositories
  • cell-load Public

    pytorch dataloaders for single-cell perturbation data

    ArcInstitute/cell-load’s past year of commit activity
    Python 42 MIT 24 12 5 Updated Feb 4, 2026
  • stack Public

    Stack is a single-cell foundation model that enables in-context learning at inference time.

    ArcInstitute/stack’s past year of commit activity
    Jupyter Notebook 78 8 0 0 Updated Jan 30, 2026
  • xsra Public

    An efficient CLI to extract sequences from the SRA

    ArcInstitute/xsra’s past year of commit activity
    Rust 120 11 6 0 Updated Jan 30, 2026
  • ncbi-vdb-sys Public

    Rust bindings to NCBI-VDB to interact with SRA files programmatically

    ArcInstitute/ncbi-vdb-sys’s past year of commit activity
    Rust 6 1 1 0 Updated Jan 30, 2026
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 35 3 8 0 Updated Jan 30, 2026
  • cyto Public

    A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

    ArcInstitute/cyto’s past year of commit activity
    Rust 32 BSD-3-Clause 1 18 0 Updated Jan 30, 2026
  • state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    ArcInstitute/state’s past year of commit activity
    Python 514 142 29 (1 issue needs help) 21 Updated Jan 28, 2026
  • Wizards-Staff Public

    Calcium imaging analysis pipeline of outputs from Lizard-Wizard for the Arc Institute.

    ArcInstitute/Wizards-Staff’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jan 26, 2026
  • binseq Public

    A high efficiency binary format for sequencing data

    ArcInstitute/binseq’s past year of commit activity
    Rust 95 6 5 0 Updated Jan 24, 2026
  • cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    ArcInstitute/cell-eval’s past year of commit activity
    Python 122 MIT 41 3 6 Updated Jan 16, 2026

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