Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
Repositories
- aind-software-docs Public
Centralized documentation repository for Scientific Computing, publishes to RTD
AllenNeuralDynamics/aind-software-docs’s past year of commit activity - analysis-pipeline-utils Public
Utilities to facilitate writing scientific analysis pipelines to run in Code Ocean, in conjunction with S3 and DocumentDB storage
AllenNeuralDynamics/analysis-pipeline-utils’s past year of commit activity - aind-fip-dff Public
This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
AllenNeuralDynamics/aind-fip-dff’s past year of commit activity - aind-analysis-wrapper Public
Capsule that serves a wrapper for running analysis functions on input data
AllenNeuralDynamics/aind-analysis-wrapper’s past year of commit activity - brainslosher-web-ui Public
AllenNeuralDynamics/brainslosher-web-ui’s past year of commit activity - aind-analysis-pipeline-template Public
Pipeline with job dispatch and analysis wrapper capsules that serves as template for analysis
AllenNeuralDynamics/aind-analysis-pipeline-template’s past year of commit activity - aind-ophys-dff Public
AllenNeuralDynamics/aind-ophys-dff’s past year of commit activity - HSFPpreprocess Public
AllenNeuralDynamics/HSFPpreprocess’s past year of commit activity
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