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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 27 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 23 8

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 15 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 13 3

  5. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

  6. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 10 3

Repositories

Showing 10 of 554 repositories
  • aind-software-docs Public

    Centralized documentation repository for Scientific Computing, publishes to RTD

    AllenNeuralDynamics/aind-software-docs’s past year of commit activity
    Python 1 MIT 0 13 1 Updated Jan 28, 2026
  • aind-analysis-job-dispatch Public

    Capsule to create the input job model for analysis wrapper

    AllenNeuralDynamics/aind-analysis-job-dispatch’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Jan 28, 2026
  • analysis-pipeline-utils Public

    Utilities to facilitate writing scientific analysis pipelines to run in Code Ocean, in conjunction with S3 and DocumentDB storage

    AllenNeuralDynamics/analysis-pipeline-utils’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Jan 28, 2026
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
    Python 0 MIT 0 7 1 Updated Jan 28, 2026
  • aind-analysis-wrapper Public

    Capsule that serves a wrapper for running analysis functions on input data

    AllenNeuralDynamics/aind-analysis-wrapper’s past year of commit activity
    Jupyter Notebook 0 MIT 3 6 1 Updated Jan 28, 2026
  • AllenNeuralDynamics/brainslosher-web-ui’s past year of commit activity
    TypeScript 0 0 1 5 Updated Jan 28, 2026
  • brainwasher Public

    0354: control software for automated tissue clearing system

    AllenNeuralDynamics/brainwasher’s past year of commit activity
    Python 0 MIT 1 16 2 Updated Jan 28, 2026
  • aind-analysis-pipeline-template Public

    Pipeline with job dispatch and analysis wrapper capsules that serves as template for analysis

    AllenNeuralDynamics/aind-analysis-pipeline-template’s past year of commit activity
    Nextflow 1 MIT 0 3 0 Updated Jan 28, 2026
  • AllenNeuralDynamics/aind-ophys-dff’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Jan 28, 2026
  • AllenNeuralDynamics/HSFPpreprocess’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 28, 2026

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