Cannot reproduce previous positive results

[yunhua1031]

Hi,

I got this following errors:

KeyError: 'insufficient_snvs'
Traceback:
File "/usr/local/bin/stream_env/lib/python3.10/site-packages/streamlit/runtime/scriptrunner/script_runner.py", line 541, in _run_script
exec(code, module.dict)
File "/usr/local/bin/StreamApp/main.py", line 365, in
flags_txt_translated = set([translate_flags[x] for x in flags_txt])
File "/usr/local/bin/StreamApp/main.py", line 365, in
flags_txt_translated = set([translate_flags[x] for x in flags_txt])

I have previously used the same input VCF before and was able to get results. Why do I get this error now?

In addition, could you please outline the requirements for input VCFs? I've noticed that for the same sample, deepvariant VCFs worked, but freebayse VCFs didn't. Could you please provide some insight?

Thank you!

[maxmilianr]

Hi,
we recently updated the app and fixed some errors, which might also have tackled your issue.
Can you try again with the current live version?

We also added more info on vcf-requirements.
If this does not help and you can share your vcf file, we are happy to look into it, if you send us the files: hug-ito@medizin.uni-leipzig.de