-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathAquatics.html
More file actions
368 lines (296 loc) · 10.9 KB
/
Aquatics.html
File metadata and controls
368 lines (296 loc) · 10.9 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<title>Aquatic Ecosystems</title>
<script src="site_libs/jquery-1.11.3/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/flatly.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
pre:not([class]) {
background-color: white;
}
</style>
<script type="text/javascript">
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState && document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlightingOnLoad(); }, 0);
}
}
</script>
<style type="text/css">
h1 {
font-size: 34px;
}
h1.title {
font-size: 38px;
}
h2 {
font-size: 30px;
}
h3 {
font-size: 24px;
}
h4 {
font-size: 18px;
}
h5 {
font-size: 16px;
}
h6 {
font-size: 12px;
}
.table th:not([align]) {
text-align: left;
}
</style>
</head>
<body>
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
code {
color: inherit;
background-color: rgba(0, 0, 0, 0.04);
}
img {
max-width:100%;
height: auto;
}
.tabbed-pane {
padding-top: 12px;
}
button.code-folding-btn:focus {
outline: none;
}
</style>
<style type="text/css">
/* padding for bootstrap navbar */
body {
padding-top: 60px;
padding-bottom: 40px;
}
/* offset scroll position for anchor links (for fixed navbar) */
.section h1 {
padding-top: 65px;
margin-top: -65px;
}
.section h2 {
padding-top: 65px;
margin-top: -65px;
}
.section h3 {
padding-top: 65px;
margin-top: -65px;
}
.section h4 {
padding-top: 65px;
margin-top: -65px;
}
.section h5 {
padding-top: 65px;
margin-top: -65px;
}
.section h6 {
padding-top: 65px;
margin-top: -65px;
}
</style>
<script>
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark it active
menuAnchor.parent().addClass('active');
// if it's got a parent navbar menu mark it active as well
menuAnchor.closest('li.dropdown').addClass('active');
});
</script>
<div class="container-fluid main-container">
<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
</script>
<!-- code folding -->
<script>
$(document).ready(function () {
// move toc-ignore selectors from section div to header
$('div.section.toc-ignore')
.removeClass('toc-ignore')
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');
// establish options
var options = {
selectors: "h1,h2,h3",
theme: "bootstrap3",
context: '.toc-content',
hashGenerator: function (text) {
return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
},
ignoreSelector: ".toc-ignore",
scrollTo: 0
};
options.showAndHide = true;
options.smoothScroll = true;
// tocify
var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>
<style type="text/css">
#TOC {
margin: 25px 0px 20px 0px;
}
@media (max-width: 768px) {
#TOC {
position: relative;
width: 100%;
}
}
.toc-content {
padding-left: 30px;
padding-right: 40px;
}
div.main-container {
max-width: 1200px;
}
div.tocify {
width: 20%;
max-width: 260px;
max-height: 85%;
}
@media (min-width: 768px) and (max-width: 991px) {
div.tocify {
width: 25%;
}
}
@media (max-width: 767px) {
div.tocify {
width: 100%;
max-width: none;
}
}
.tocify ul, .tocify li {
line-height: 20px;
}
.tocify-subheader .tocify-item {
font-size: 0.90em;
padding-left: 25px;
text-indent: 0;
}
.tocify .list-group-item {
border-radius: 0px;
}
</style>
<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
<div id="TOC" class="tocify">
</div>
</div>
<div class="toc-content col-xs-12 col-sm-8 col-md-9">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Benbow Lab</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">Home</a>
</li>
<li>
<a href="about.html">About</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
Tutorials
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="Phylogeny.html">Phylogeny from VCF file</a>
</li>
<li>
<a href="Hippo.html">16S Analysis Example</a>
</li>
</ul>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
Research Focuses
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="Aquatics.html">Aquatic Ecosystems</a>
</li>
</ul>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div class="fluid-row" id="header">
<h1 class="title toc-ignore">Aquatic Ecosystems</h1>
</div>
<p>Aquatic habitats contribute to ecosystem processes in every biome of Earth. In these systems there are notable bottom-up and top-down controls that often work synergistically to regulate ecosystem function and resilience to perturbations. Aquatic studies in the Benbow Lab are addressing mechanistic questions at several scales of inquiry. These studies range from top-down control of epiphytic biofilm development to collaborative efforts quantifying the role of hydraulic habitat templates on macroinvertebrate community assembly and the influence of native riparian plants on in-stream ecosystem processes. Additional studies are on-going in the Republic of Palau in understanding the factors that influence the resilience or change of watersheds to land use degradation and developing unique bioassessment methods to monitor such ecosystem responses.</p>
<div id="invasive-plant-impacts-on-riparian-aquatic-linkages" class="section level1">
<h1>Invasive Plant Impacts on Riparian-Aquatic Linkages</h1>
<p>Exotic species have detrimental impacts on native ecosystems and cost human society nearly $137 billion per year. Non-native invasive plants tend to degrade habitats by out competing native plants and reducing biodiversity within ecosystems. Plant invaders are most successful in disturbed habitats such as flood plains and habitat edges. Riparian zones (forested regions along stream banks) are regularly disturbed habitats, and therefore, easily invaded by invasive plants. Due to this characteristic, riparian zones provide an area where invasive plants interact and impact aquatic systems. Understanding how invasive riparian plants influence connections between terrestrial and aquatic habitats is the overarching goal in this research project. Aquatic systems depend on inputs from terrestrial environments (e.g. leaves, woody debris, and other detrital materials) to support aquatic food-webs and ecosystem processes. Macroinvertebrate and microbial communities use terrestrial inputs for habitat and food resources. Therefore, changes in leaf litter inputs from the terrestrial environment due to the introduction of a terrestrial invasive plant may result in substantial impacts on aquatic communities and food-web dynamics. Changes in terrestrial leaf inputs may further influence stream organic matter processing, nutrient cycling, and light availability within streams. Amur honeysuckle (Lonicera maackii: a type of bush honeysuckle) is an invasive species that has rapidly become dominant in the forested areas of the Midwestern and eastern USA. Once this species is established it 1) reduces the growth and reproductive success of native shrubs and trees, 2) negatively impacts the growth and survivorship of terrestrial insects, and 3) is responsible for the loss of native plant diversity through competition. Quasi-monocultures of Amur honeysuckle have been found in riparian zones throughout the Miami Valley, OH region and create dense shrub canopies overarching streams. These honeysuckle canopies contribute a substantial amount of leaf litter that enter streams, providing an excellent model system to identify the impacts riparian invasive plants have on aquatic food-webs and ecosystem processes. Our research objectives are 1) to identify the impacts of Amur honeysuckle on terrestrial-aquatic connections through examination of cross-system subsidies, food-web dynamics, and ecosystem processes and 2) to determine the potential toxicity effects of Amur honeysuckle on aquatic macroinvertebrates. We are conducting a series of field and laboratory experiments to gain a pattern to process understanding of the impacts Amur honeysuckle has on aquatic systems. We hope that our research findings will support local and regional restoration and management programs while broadening our understanding of how invasive species influence ecosystem dynamics.</p>
</div>
<div id="other-projects" class="section level1">
<h1>Other Projects</h1>
</div>
</div>
</div>
</div>
<script>
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.header').parent('thead').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
</script>
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>