diff --git a/anatomical_map.json b/anatomical_map.json
index 4e7d3b3..7c4acf2 100644
--- a/anatomical_map.json
+++ b/anatomical_map.json
@@ -172,8 +172,8 @@
"name": "cardiac muscle of left ventricle"
},
"cardio_24": {
- "term": "UBERON:0001986",
- "name": "endothelium"
+ "term": "UBERON:0015129",
+ "name": "Epicardial Fat"
},
"cardio_25": {
"term": "UBERON:0003381",
@@ -564,8 +564,8 @@
"name": "Red Pulp of Spleen"
},
"digestive_62": {
- "term": "UBERON:0001251",
- "name": "Marginal Zone of Spleen"
+ "term": "ILX:0793681",
+ "name": "Marginal zone network"
},
"digestive_63": {
"term": "UBERON:0001960",
@@ -687,6 +687,86 @@
"term": "UBERON:0002017",
"name": "portal vein"
},
+ "digestive_93": {
+ "term": "ILX:0795342",
+ "name": "upper part of the anal canal"
+ },
+ "digestive_94": {
+ "term": "UBERON:0001902",
+ "name": "epithelium of small intestine"
+ },
+ "digestive_95": {
+ "term": "ILX:0771006",
+ "name": "wall of duodenum"
+ },
+ "digestive_96": {
+ "term": "UBERON:0014390",
+ "name": "muscle layer of ileum"
+ },
+ "digestive_97": {
+ "term": "UBERON:0012377",
+ "name": "muscle layer of jejunum"
+ },
+ "digestive_98": {
+ "term": "ILX:0773238",
+ "name": "Muscle layer of transverse colon"
+ },
+ "digestive_99": {
+ "term": "ILX:0795341",
+ "name": "muscle layer of proximal colon"
+ },
+ "digestive_100": {
+ "term": "UBERON:0005436",
+ "name": "common hepatic artery"
+ },
+ "digestive_101": {
+ "term": "UBERON:0011198",
+ "name": "muscle layer of large intestine"
+ },
+ "digestive_102": {
+ "term": "UBERON:0001278",
+ "name": "epithelium of large intestine"
+ },
+ "digestive_103": {
+ "term": "UBERON:0004222",
+ "name": "stomach smooth muscle"
+ },
+ "digestive_104": {
+ "term": "UBERON:8410061",
+ "name": "Longitudinal Muscle Layer of Colon"
+ },
+ "digestive_105": {
+ "term": "UBERON:0012419",
+ "name": "Taenia coli"
+ },
+ "digestive_106": {
+ "term": "UBERON:0003832",
+ "name": "esophagus muscle"
+ },
+ "digestive_107": {
+ "term": "UBERON:0004239",
+ "name": "small intestine smooth muscle"
+ },
+ "digestive_108": {
+ "term": "UBERON:0018111",
+ "name": "muscle layer of rectum"
+ },
+ "digestive_109": {
+ "term": "UBERON:0003354",
+ "name": "anal canal epithelium"
+ },
+ "digestive_110": {
+ "term": "UBERON:0012490",
+ "name": "muscle layer of anal canal"
+ },
+ "digestive_111": {
+ "term": "UBERON:0015716",
+ "name": "epithelium of rectum"
+ },
+ "digestive_112": {
+ "term": "UBERON:0002108",
+ "name": "small intestine"
+ },
"reproductive_1": {
"term": "UBERON:0000995",
"name": "uterus"
@@ -811,6 +891,14 @@
"term": "UBERON:0002493",
"name": "Uterine artery"
},
+ "reproductive_32": {
+ "term": "UBERON:0004713",
+ "name": "Corpus cavernosum penis"
+ },
+ "reproductive_33": {
+ "term": "UBERON:0011183",
+ "name": "corpus spongiosum of penis"
+ },
"muscle_1": {
"term": "ILX:0738319",
"name": "T1-T2 intercostal muscle"
@@ -1216,7 +1304,7 @@
"name": "Barrington's nucleus"
},
"brain_14": {
- "term": "UBERON:0003040",
+ "term": "ILX:0793626",
"name": "Ventrolateral Periaqueductal Gray"
},
"brain_15": {
@@ -1371,6 +1459,26 @@
"term": "UBERON:0002141",
"name": "Oculomotor nucleus"
},
+ "brain_56": {
+ "term": "UBERON:0001717",
+ "name": "spinal nucleus of trigeminal nerve"
+ },
+ "brain_57": {
+ "term": "UBERON:0002945",
+ "name": "ventral posteromedial nucleus of thalamus"
+ },
+ "brain_58": {
+ "term": "UBERON:0002866",
+ "name": "caudal part of spinal trigeminal nucleus"
+ },
+ "brain_59": {
+ "term": "UBERON:0002873",
+ "name": "interpolar part of spinal trigeminal nucleus"
+ },
+ "brain_60": {
+ "term": "UBERON:0002591",
+ "name": "oral part of spinal trigeminal nucleus"
+ },
"bolser_2": {
"term": "ILX:0738309",
"name": "Internal branch of inferior laryngeal nerve"
@@ -1515,6 +1623,38 @@
"term": "ILX:0795060",
"name": "eccrine sweat gland of the face"
},
+ "label_28": {
+ "term": "UBERON:0001456",
+ "name": "face"
+ },
+ "label_29": {
+ "term": "UBERON:0000033",
+ "name": "head"
+ },
+ "label_30": {
+ "term": "UBERON:0000167",
+ "name": "oral cavity"
+ },
+ "label_31": {
+ "term": "UBERON:0002075",
+ "name": "viscus"
+ },
+ "label_32": {
+ "term": "UBERON:0001484",
+ "name": "articular capsule"
+ },
+ "label_33": {
+ "term": "UBERON:0002097",
+ "name": "skin of body"
+ },
+ "label_34": {
+ "term": "UBERON:0001015",
+ "name": "musculature"
+ },
+ "label_35": {
+ "term": "UBERON:0001630",
+ "name": "muscle organ"
+ },
"vagus_n": {
"term": "UBERON:0001759",
"name": "Vagus Nerve"
diff --git a/cat_flatmap.svg b/cat_flatmap.svg
index bea4768..0ee25ab 100644
--- a/cat_flatmap.svg
+++ b/cat_flatmap.svg
@@ -910,75 +910,39 @@
.id(S44_T5)
-
- .id(S44_T6-1)
-
- .id(S44_T6)
-
-
-
- .id(S44_T7-1)
-
- .id(S44_T7)
-
-
-
- .id(S44_T8-1)
-
- .id(S44_T8)
-
-
-
- .id(S44_T9-1)
-
- .id(S44_T9)
-
-
-
- .id(S44_T10-1)
-
- .id(S44_T10)
-
-
-
- .id(S44_T11-1)
-
- .id(S44_T11)
-
-
-
- .id(S44_T12-1)
-
- .id(S44_T12)
-
-
-
- .id(S44_T13_L)
-
- .id(S44_T13_R)
-
- .id(S44_T13)
-
-
-
-
- .id(S44_L1-1)
-
- .id(S44_L1)
-
-
-
- .id(S44_L2-1)
-
- .id(S44_L2)
-
-
-
- .id(S44_L3-1)
-
- .id(S44_L3)
-
-
+
+ .id(S44_T6)
+
+
+ .id(S44_T7)
+
+
+ .id(S44_T8)
+
+
+ .id(S44_T9)
+
+
+ .id(S44_T10)
+
+
+ .id(S44_T11)
+
+
+ .id(S44_T12)
+
+
+ .id(S44_T13)
+
+
+ .id(S44_L1)
+
+
+ .id(S44_L2)
+
+
+ .id(S44_L3)
+
.id(S44_L4)
@@ -1413,7 +1377,7 @@
.id(S33_S4)
- .closed interior id(spinal_32-31)
+ .id(spinal_32-31)
@@ -1463,7 +1427,7 @@
.id(S33_S3)
- .closed interior id(spinal_32-30)
+ .id(spinal_32-30)
@@ -1513,7 +1477,7 @@
.id(S33_S2)
- .closed interior id(spinal_32-29)
+ .id(spinal_32-29)
@@ -1569,7 +1533,7 @@
.id(S33_S1)
- .closed interior id(spinal_32-28)
+ .id(spinal_32-28)
@@ -1634,7 +1598,7 @@
.id(S33_L6)
- .closed interior id(spinal_32-27)
+ .id(spinal_32-27)
@@ -1696,7 +1660,7 @@
.id(S33_L5)
- .closed interior id(spinal_32-26)
+ .id(spinal_32-26)
@@ -1758,7 +1722,7 @@
.id(S33_L4)
- .closed interior id(spinal_32-25)
+ .id(spinal_32-25)
@@ -1814,7 +1778,7 @@
.id(S33_L3)
- .closed interior id(spinal_32-24)
+ .id(spinal_32-24)
@@ -1870,7 +1834,7 @@
.id(S33_L2)
- .closed interior id(spinal_32-23)
+ .id(spinal_32-23)
@@ -1929,7 +1893,7 @@
.id(S33_L1)
- .closed interior id(spinal_32-22)
+ .id(spinal_32-22)
@@ -1982,7 +1946,7 @@
.id(S33_T13)
- .closed interior id(spinal_32-21)
+ .id(spinal_32-21)
@@ -2038,7 +2002,7 @@
.id(S33_T12)
- .closed interior id(spinal_32-20)
+ .id(spinal_32-20)
@@ -2094,7 +2058,7 @@
.id(S33_T11)
- .closed interior id(spinal_32-19)
+ .id(spinal_32-19)
@@ -2147,7 +2111,7 @@
.id(S33_T10)
- .closed interior id(spinal_32-18)
+ .id(spinal_32-18)
@@ -2200,7 +2164,7 @@
.id(S33_T9)
- .closed interior id(spinal_32-17)
+ .id(spinal_32-17)
@@ -2250,7 +2214,7 @@
.id(S33_T8)
- .closed interior id(spinal_32-16)
+ .id(spinal_32-16)
@@ -2303,7 +2267,7 @@
.id(S33_T7)
- .closed interior id(spinal_32-15)
+ .id(spinal_32-15)
@@ -2353,7 +2317,7 @@
.id(S33_T6)
- .closed interior id(spinal_32-14)
+ .id(spinal_32-14)
@@ -2403,7 +2367,7 @@
.id(S33_T5)
- .closed interior id(spinal_32-13)
+ .id(spinal_32-13)
@@ -2453,7 +2417,7 @@
.id(S33_T4)
- .closed interior id(spinal_32-12)
+ .id(spinal_32-12)
@@ -2503,7 +2467,7 @@
.id(S33_T3)
- .closed interior id(spinal_32-11)
+ .id(spinal_32-11)
@@ -2556,7 +2520,7 @@
.id(S33_T2)
- .closed interior id(spinal_32-10)
+ .id(spinal_32-10)
@@ -2615,7 +2579,7 @@
.id(S33_T1)
- .closed interior id(spinal_32-9)
+ .id(spinal_32-9)
@@ -2680,7 +2644,7 @@
.id(S33_C8)
- .closed interior id(spinal_32-8)
+ .id(spinal_32-8)
@@ -2748,7 +2712,7 @@
.id(S33_C7)
- .closed interior id(spinal_32-7)
+ .id(spinal_32-7)
@@ -2810,7 +2774,7 @@
.id(S33_C6)
- .closed interior id(spinal_32-6)
+ .id(spinal_32-6)
@@ -2875,7 +2839,7 @@
.id(S33_C5)
- .closed interior id(spinal_32-5)
+ .id(spinal_32-5)
@@ -2937,7 +2901,7 @@
.id(S33_C4)
- .closed interior id(spinal_32-4)
+ .id(spinal_32-4)
@@ -2993,7 +2957,7 @@
.id(S33_C3)
- .closed interior id(spinal_32-3)
+ .id(spinal_32-3)
@@ -3046,7 +3010,7 @@
.id(S33_C2)
- .closed interior id(spinal_32-2)
+ .id(spinal_32-2)
@@ -3096,7 +3060,7 @@
.id(S33_C1)
- .closed interior id(spinal_32-1)
+ .id(spinal_32-1)
@@ -10631,6 +10595,9 @@
+
+ .id(digestive_93-1)
+
.id(digestive_79-1)
@@ -11127,6 +11094,31 @@
+
+
+ .id(digestive_101-1)
+
+
+ .id(ganglion_28-1)
+
+
+ .id(ganglion_32-1)
+
+
+ .id(digestive_102-1)
+
+
+
+
+ .id(digestive_104-1)
+
+
+ .id(ganglion_33-1)
+
+
+ .id(digestive_105-1)
+
+
.id(endocrine_2-1)
@@ -11343,41 +11335,6 @@
-
- .id(cardio_27-1)
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
.id(cardio_11-1)
@@ -20061,7 +20018,7 @@
.id(brain_34-1)
- .id(brain_44-1)
+ .id(brain_56-1)
.id(brain_45-1)
@@ -20075,6 +20032,18 @@
.id(brain_55-1)
+
+ .id(brain_57-1)
+
+
+ .id(brain_58-1)
+
+
+ .id(brain_59-1)
+
+
+ .id(brain_60-1)
+
Labels
@@ -20085,31 +20054,19 @@
.id(cardio_3-1)
-
- .id(cardio_18-1)
-
.id(cardio_19-1)
-
- .id(cardio_20-1)
-
.id(cardio_21-1)
-
- .id(cardio_22-1)
-
-
- .id(cardio_23-1)
-
.id(cardio_24-1)
- .id(cardio_25-1)
+ .id(cardio_27-1)
-
+
.id(cardio_28-1)
@@ -20124,7 +20081,7 @@
.id(cardio_29-1)
-
+
.id(cardio_29-2)
@@ -20133,20 +20090,11 @@
.id(cardio_29-4)
-
- .id(cardio_31-1)
-
-
- .id(cardio_33-1)
-
-
- .id(cardio_34-1)
-
.id(cardio_35-1)
- .id(cardio_35-2)
+ .id(cardio_16-1)
.id(cardio_36-1)
@@ -20283,6 +20231,9 @@
.id(digestive_92-1)
+
+ .id(digestive_112-1)
+
Blue
@@ -20396,6 +20347,12 @@
.id(reproductive_31-1)
+
+ .id(reproductive_32-1)
+
+
+ .id(reproductive_33-1)
+
respiratory_labels
@@ -20570,9 +20527,6 @@
.id(urinary_9-1)
-
- .id(urinary_10-1)
-
.id(urinary_11-1)
@@ -20685,33 +20639,6 @@
-
- .id(label_5-1)
-
-
- .id(label_7-1)
-
-
- .id(label_8-1)
-
-
- .id(label_9-1)
-
-
- .id(label_10-1)
-
-
- .id(label_11-1)
-
-
- .id(label_12-1)
-
-
- .id(label_13-1)
-
-
- .id(label_23-1)
-
.id(body_10-1)
@@ -20733,6 +20660,75 @@
.id(label_27-1)
+
+ .id(label_31-1)
+
+
+ .id(label_30-1)
+
+
+ .id(label_29-1)
+
+
+ .id(label_28-1)
+
+
+ .id(label_32-1)
+
+
+ .id(label_33-1)
+
+
+ .id(label_34-1)
+
+
+ .id(label_35-1)
+
+
+ .id(digestive_94-1)
+
+
+ .id(digestive_96-1)
+
+
+ .id(digestive_97-1)
+
+
+ .id(digestive_98-1)
+
+
+ .id(digestive_99-1)
+
+
+ .id(digestive_100-1)
+
+
+ .id(digestive_95-1)
+
+
+ .id(digestive_103-1)
+
+
+ .id(digestive_106-1)
+
+
+ .id(digestive_107-1)
+
+
+ .id(digestive_108-1)
+
+
+ .id(digestive_111-1)
+
+
+ .id(digestive_110-1)
+
+
+ .id(digestive_109-1)
+
+
+ .id(digestive_13-1)
+
Ganglia
@@ -20823,9 +20819,6 @@
.id(ganglion_5-1)
-
- .id(ganglion_8-1)
-
.id(ganglion_9-1)
@@ -20874,24 +20867,39 @@
.id(ganglion_25-1)
-
- .id(ganglion_26-1)
-
.id(ganglion_27-1)
+
+ .id(ganglion_29-1)
+
+
+ .id(ganglion_30-1)
+
+
+ .id(ganglion_31-1)
+
+
+ .id(ganglion_34-1)
+
+
+ .id(ganglion_35-1)
+
+
+ .id(ganglion_36-1)
+
+
+ .id(ganglion_37-1)
+
+
+ .id(ganglion_38-1)
+
Plexus
.id(plexus_1-1)
-
- .id(plexus_5-1)
-
-
- .id(plexus_6-1)
-
.id(plexus_7-1)
@@ -20920,9 +20928,6 @@
.id(plexus_14-1)
-
- .id(plexus_15-1)
-
.id(plexus_16-1)
@@ -20938,6 +20943,15 @@
.id(plexus_20-1)
+
+ .id(plexus_21-1)
+
+
+ .id(plexus_5-1)
+
+
+ .id(plexus_24-1)
+
Nodes
@@ -22957,6 +22971,15 @@
.id(nasopalatine_c)
+
+ .id(trigeminal_c)
+
+
+ .id(penile_cavernous_c)
+
+
+ .id(cardiac_interganglionic_c)
+
\ No newline at end of file
diff --git a/connectivity_terms.json b/connectivity_terms.json
index 874cfcc..a990692 100644
--- a/connectivity_terms.json
+++ b/connectivity_terms.json
@@ -1,21 +1,4 @@
[
- {
- "id": [
- "UBERON:0007240",
- [
- "UBERON:0000947"
- ]
- ],
- "name": "tunica adventitia of artery/aorta",
- "aliases": [
- [
- "UBERON:0007240",
- [
- "UBERON:0001496"
- ]
- ]
- ]
- },
{
"id": [
"ILX:0793234",
@@ -23,10 +6,6 @@
],
"name": "interganglionic branch of inferior cervical ganglion to middle cervical ganglion",
"aliases": [
- [
- "ILX:0793363",
- []
- ],
[
"ILX:0739241",
[]
@@ -126,10 +105,6 @@
[
"ILX:0795013",
[]
- ],
- [
- "ILX:0795017",
- []
]
]
},
@@ -231,19 +206,27 @@
]
],
[
- "ILX:0795012",
+ "UBERON:0018676",
[]
],
[
- "ILX:0795014",
+ "UBERON:0011926",
[]
],
[
- "UBERON:0018676",
+ "ILX:0795513",
[]
],
[
- "UBERON:0011926",
+ "ILX:0795514",
+ []
+ ],
+ [
+ "ILX:0795515",
+ []
+ ],
+ [
+ "ILX:0795516",
[]
]
]
@@ -327,19 +310,6 @@
]
]
},
- {
- "id": [
- "ILX:0793141",
- []
- ],
- "name": "urethral rhabdosphincter",
- "aliases": [
- [
- "UBERON:0004917",
- []
- ]
- ]
- },
{
"id": [
"ILX:0786272",
@@ -491,18 +461,6 @@
]
]
},
- {
- "id": [
- "UBERON:0002115",
- []
- ],
- "aliases": [
- [
- "ILX:0793735",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0000988",
@@ -638,19 +596,6 @@
]
]
},
- {
- "id": [
- "UBERON:0005303",
- []
- ],
- "name": "hypogastric nerve",
- "aliases": [
- [
- "UBERON:0002014",
- []
- ]
- ]
- },
{
"id": [
"ILX:0793141",
@@ -663,11 +608,7 @@
[]
],
[
- "UBERON:0004713",
- []
- ],
- [
- "ILX:0793807",
+ "UBERON:0004917",
[]
]
]
@@ -1321,10 +1262,6 @@
[
"ILX:0786788",
[]
- ],
- [
- "ILX:0785947",
- []
]
]
},
@@ -1419,10 +1356,6 @@
[
"ILX:0786477",
[]
- ],
- [
- "ILX:0787285",
- []
]
]
},
@@ -1535,10 +1468,6 @@
[
"UBERON:0001279",
[]
- ],
- [
- "CL:1000488",
- []
]
]
},
@@ -1565,10 +1494,6 @@
"UBERON:0001172",
[]
],
- [
- "CL:0000182",
- []
- ],
[
"ILX:0795016",
[]
@@ -1612,7 +1537,7 @@
[]
],
[
- "CL:0009094",
+ "UBERON:0001639",
[]
]
]
@@ -1625,7 +1550,7 @@
"name": "T1 segment of thoracic spinal cord",
"aliases": [
[
- "ILX:0792474",
+ "ILX:0795493",
[]
]
]
@@ -1703,173 +1628,577 @@
[]
],
[
- "ILX:0795036",
+ "ILX:0795045",
[]
],
[
- "ILX:0795033",
+ "ILX:0795041",
[]
],
[
- "ILX:0795037",
+ "ILX:0795046",
[]
],
[
- "ILX:0795035",
+ "ILX:0795043",
[]
],
[
- "ILX:0795032",
+ "ILX:0795047",
[]
],
[
- "ILX:0795038",
+ "ILX:0795042",
[]
],
[
- "ILX:0795039",
+ "ILX:0795040",
[]
],
[
- "ILX:0795034",
+ "ILX:0795023",
[]
],
[
- "ILX:0795045",
+ "ILX:0795024",
[]
],
[
- "ILX:0795041",
+ "ILX:0795025",
[]
],
[
- "ILX:0795046",
+ "ILX:0795031",
[]
],
[
- "ILX:0795043",
+ "ILX:0795044",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0793359",
+ []
+ ],
+ "name": "Thirteenth thoracic dorsal root ganglion",
+ "aliases": [
[
- "ILX:0795047",
+ "ILX:0795052",
[]
],
[
- "ILX:0795042",
+ "ILX:0795051",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0001184",
+ []
+ ],
+ "name": "renal artery",
+ "aliases": [
[
- "ILX:0795048",
+ "ILX:0795058",
[]
],
[
- "ILX:0795040",
+ "ILX:0795053",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0787528",
+ []
+ ],
+ "name": "Second sacral nerve",
+ "aliases": [
[
- "ILX:0795023",
+ "ILX:0785238",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0791971",
+ []
+ ],
+ "name": "Third sacral nerve",
+ "aliases": [
+ [
+ "ILX:0788532",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0792327",
+ []
+ ],
+ "name": "Fourth sacral nerve",
+ "aliases": [
+ [
+ "ILX:0788777",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0001155",
+ []
+ ],
+ "name": "colon",
+ "aliases": [
+ [
+ "UBERON:0001156",
[]
],
[
- "ILX:0795024",
+ "UBERON:0001157",
[]
],
[
- "ILX:0795025",
+ "UBERON:0001158",
[]
],
[
- "ILX:0795031",
+ "UBERON:0001159",
[]
],
[
- "ILX:0795044",
+ "ILX:0773031",
[]
]
]
},
{
"id": [
- "ILX:0793359",
+ "ILX:0793558",
[]
],
- "name": "Thirteenth thoracic dorsal root ganglion",
+ "name": "Distal stomach",
"aliases": [
[
- "ILX:0795052",
+ "UBERON:0001165",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0793658",
+ []
+ ],
+ "name": "Proximal stomach",
+ "aliases": [
+ [
+ "UBERON:0005477",
[]
],
[
- "ILX:0795051",
+ "UBERON:0001161",
[]
]
]
},
{
"id": [
- "ILX:0786163",
+ "ILX:0793656",
[]
],
- "name": "ventral root of the eighth cervical spinal cord segment",
+ "name": "myenteric nerve plexus of stomach",
"aliases": [
[
- "UBERON:0014634",
+ "ILX:0795344",
[]
]
]
},
{
"id": [
- "UBERON:0001184",
+ "ILX:0795492",
[]
],
- "name": "renal artery",
+ "name": "posterior root of thirteenth thoracic nerve",
"aliases": [
[
- "ILX:0795058",
+ "ILX:0795050",
[]
],
[
- "ILX:0795053",
+ "ILX:0795049",
[]
]
]
},
{
"id": [
- "ILX:0787528",
+ "UBERON:0018680",
[]
],
- "name": "Second sacral nerve",
+ "name": "greater splanchnic nerve",
"aliases": [
[
- "ILX:0785238",
+ "ILX:0796950",
[]
]
]
},
{
"id": [
- "ILX:0791971",
+ "UBERON:0018681",
[]
],
- "name": "Third sacral nerve",
+ "name": "lesser splanchnic nerve",
"aliases": [
[
- "ILX:0788532",
+ "ILX:0796952",
[]
]
]
},
{
"id": [
- "ILX:0792327",
+ "ILX:0785632",
[]
],
- "name": "Fourth sacral nerve",
+ "name": "Posterior root of first thoracic nerve",
"aliases": [
[
- "ILX:0788777",
+ "ILX:0790352",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0791802",
+ []
+ ],
+ "name": "Posterior root of second thoracic nerve",
+ "aliases": [
+ [
+ "ILX:0784952",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0789246",
+ []
+ ],
+ "name": "Posterior root of third thoracic nerve",
+ "aliases": [
+ [
+ "ILX:0788815",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0784605",
+ []
+ ],
+ "name": "Posterior root of seventh thoracic nerve",
+ "aliases": [
+ [
+ "ILX:0788023",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0787870",
+ []
+ ],
+ "name": "Posterior root of eight cervical nerve",
+ "aliases": [
+ [
+ "ILX:0792093",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006470"
+ ]
+ ],
+ "name": "gray matter of spinal cord/eight cervical spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797431",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006457"
+ ]
+ ],
+ "name": "gray matter of spinal cord/first thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797432",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006458"
+ ]
+ ],
+ "name": "gray matter of spinal cord/second thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797433",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006459"
+ ]
+ ],
+ "name": "gray matter of spinal cord/third thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797434",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006455"
+ ]
+ ],
+ "name": "gray matter of spinal cord/seventh thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0796498",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006456"
+ ]
+ ],
+ "name": "gray matter of spinal cord/eight thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795032",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006465"
+ ]
+ ],
+ "name": "gray matter of spinal cord/ninth thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795033",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006466"
+ ]
+ ],
+ "name": "gray matter of spinal cord/tenth thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795034",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006467"
+ ]
+ ],
+ "name": "gray matter of spinal cord/eleventh thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795035",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006468"
+ ]
+ ],
+ "name": "gray matter of spinal cord/twelfth thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795036",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "ILX:0793357"
+ ]
+ ],
+ "name": "gray matter of spinal cord/thirteenth thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795037",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006448"
+ ]
+ ],
+ "name": "gray matter of spinal cord/first lumbar spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795038",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006450"
+ ]
+ ],
+ "name": "gray matter of spinal cord/second lumbar spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795039",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002844",
+ []
+ ],
+ "name": "eight cervical dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0785251",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002845",
+ []
+ ],
+ "name": "first thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0784660",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002846",
+ []
+ ],
+ "name": "second thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0785420",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002847",
+ []
+ ],
+ "name": "third thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0791100",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002850",
+ []
+ ],
+ "name": "seventh thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0785878",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0793359",
+ []
+ ],
+ "name": "thirteenth thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0795494",
[]
]
]
diff --git a/manifest.json b/manifest.json
index ef8a121..5298e38 100644
--- a/manifest.json
+++ b/manifest.json
@@ -3,7 +3,7 @@
"models": "NCBITaxon:9685",
"description": "description.json",
"properties": "properties.json",
- "sckan-version": "sckan-2024-09-21",
+ "sckan-version": "sckan-2026-02-11",
"sources": [
{
"id": "whole-cat",
diff --git a/properties.json b/properties.json
index 2e37c9f..972c2c9 100644
--- a/properties.json
+++ b/properties.json
@@ -1252,145 +1252,128 @@
"name": "Anterior root of fourth sacral nerve"
},
"S44_C1": {
- "class": "spinal_44"
+ "models": "ILX:0784521",
+ "name": "Posterior root of first cervical nerve"
},
"S44_C2": {
- "class": "spinal_44"
+ "models": "ILX:0785587",
+ "name": "Posterior root of second cervical nerve"
},
"S44_C3": {
- "class": "spinal_44"
+ "models": "ILX:0784978",
+ "name": "Posterior root of third cervical nerve"
},
"S44_C4": {
- "class": "spinal_44"
+ "models": "ILX:0788437",
+ "name": "Posterior root of fourth cervical nerve"
},
"S44_C5": {
- "class": "spinal_44"
+ "models": "ILX:0785440",
+ "name": "Posterior root of fifth cervical nerve"
},
"S44_C6": {
- "class": "spinal_44"
+ "models": "ILX:0792748",
+ "name": "Posterior root of sixth cervical nerve"
},
"S44_C7": {
- "class": "spinal_44"
+ "models": "ILX:0789105",
+ "name": "Posterior root of seventh cervical nerve"
},
"S44_C8": {
- "class": "spinal_44"
+ "models": "ILX:0787870",
+ "name": "Posterior root of eighth cervical nerve"
},
"S44_L1": {
- "class": "spinal_44"
- },
- "S44_L1-1": {
"models": "ILX:0787779",
"name": "posterior root of first lumbar nerve"
},
"S44_L2": {
- "class": "spinal_44"
- },
- "S44_L2-1": {
"models": "ILX:0792058",
"name": "posterior root of second lumbar nerve"
},
"S44_L3": {
- "class": "spinal_44"
- },
- "S44_L3-1": {
"models": "ILX:0787227",
"name": "posterior root of third lumbar nerve"
},
"S44_L4": {
- "class": "spinal_44"
+ "models": "ILX:0786747",
+ "name": "posterior root of fourth lumbar nerve"
},
"S44_L5": {
- "class": "spinal_44"
+ "models": "ILX:0785201",
+ "name": "posterior root of fifth lumbar nerve"
},
"S44_L6": {
- "class": "spinal_44"
+ "models": "ILX:0795491",
+ "name": "posterior root of sixth lumbar nerve"
},
"S44_T1": {
- "class": "spinal_44"
+ "models": "ILX:0785632",
+ "name": "posterior root of first thoracic nerve"
},
"S44_T2": {
- "class": "spinal_44"
+ "models": "ILX:0791802",
+ "name": "posterior root of second thoracic nerve"
},
"S44_T3": {
- "class": "spinal_44"
+ "models": "ILX:0789246",
+ "name": "posterior root of third thoracic nerve"
},
"S44_T4": {
- "class": "spinal_44"
+ "models": "ILX:0785816",
+ "name": "posterior root of fourth thoracic nerve"
},
"S44_T5": {
- "class": "spinal_44"
+ "models": "ILX:0788907",
+ "name": "posterior root of fifth thoracic nerve"
},
"S44_T6": {
- "class": "spinal_44"
- },
- "S44_T6-1": {
"models": "ILX:0785909",
"name": "posterior root of sixth thoracic nerve"
},
"S44_T7": {
- "class": "spinal_44"
- },
- "S44_T7-1": {
"models": "ILX:0784605",
"name": "posterior root of seventh thoracic nerve"
},
"S44_T8": {
- "class": "spinal_44"
- },
- "S44_T8-1": {
"models": "ILX:0792624",
"name": "posterior root of eighth thoracic nerve"
},
"S44_T9": {
- "class": "spinal_44"
- },
- "S44_T9-1": {
"models": "ILX:0789741",
"name": "posterior root of ninth thoracic nerve"
},
"S44_T10": {
- "class": "spinal_44"
- },
- "S44_T10-1": {
"models": "ILX:0789892",
"name": "posterior root of tenth thoracic nerve"
},
"S44_T11": {
- "class": "spinal_44"
- },
- "S44_T11-1": {
"models": "ILX:0790338",
"name": "posterior root of eleventh thoracic nerve"
},
"S44_T12": {
- "class": "spinal_44"
- },
- "S44_T12-1": {
"models": "ILX:0787665",
"name": "posterior root of twelfth thoracic nerve"
},
"S44_T13": {
- "class": "spinal_44"
- },
- "S44_T13_L": {
- "models": "ILX:0795050",
- "name": "Posterior root of left thirteenth thoracic nerve"
- },
- "S44_T13_R": {
- "models": "ILX:0795049",
- "name": "Posterior root of right thirteenth thoracic nerve"
+ "models": "ILX:0795492",
+ "name": "posterior root of thirteenth thoracic nerve"
},
"S44_S1": {
- "class": "spinal_44"
+ "models": "ILX:0791633",
+ "name": "Posterior root of first sacral nerve"
},
"S44_S2": {
- "class": "spinal_44"
+ "models": "ILX:0788723",
+ "name": "Posterior root of second sacral nerve"
},
"S44_S3": {
- "class": "spinal_44"
+ "models": "ILX:0786145",
+ "name": "Posterior root of third sacral nerve"
},
"S44_S4": {
- "class": "spinal_44"
+ "models": "ILX:0785338",
+ "name": "Posterior root of fourth sacral nerve"
},
"S45_C1": {
"models": "UBERON:0002838",
@@ -2059,6 +2042,72 @@
"type": "ganglion",
"class": "auto-hide"
},
+ "ganglion_28-1": {
+ "models": "ILX:0795345",
+ "name": "myenteric nerve plexus ganglion of large intestine",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_29-1": {
+ "models": "UBERON:0001809",
+ "name": "enteric ganglion",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_30-1": {
+ "models": "ILX:0795348",
+ "name": "submucosal nerve plexus ganglion of small intestine",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_31-1": {
+ "models": "ILX:0793735",
+ "name": "Myenteric ganglion of small intestine",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_32-1": {
+ "models": "ILX:0795349",
+ "name": "submucosal nerve plexus ganglion of large intestine",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_33-1": {
+ "models": "ILX:0793734",
+ "name": "Myenteric ganglion",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_34-1": {
+ "models": "ILX:0795343",
+ "name": "myenteric nerve plexus ganglion of esophagus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_35-1": {
+ "models": "ILX:0795350",
+ "name": "submucosal nerve plexus ganglion of rectum",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_36-1": {
+ "models": "ILX:0795351",
+ "name": "submucosal nerve plexus ganglion of anus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_37-1": {
+ "models": "ILX:0795346",
+ "name": "myenteric nerve plexus ganglion of rectum",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_38-1": {
+ "models": "ILX:0795347",
+ "name": "myenteric nerve plexus ganglion of anus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
"body_6-1": {
"class": "body_6"
},
@@ -2223,6 +2272,21 @@
"brain_55-1": {
"class": "brain_55"
},
+ "brain_56-1": {
+ "class": "brain_56"
+ },
+ "brain_57-1": {
+ "class": "brain_57"
+ },
+ "brain_58-1": {
+ "class": "brain_58"
+ },
+ "brain_59-1": {
+ "class": "brain_59"
+ },
+ "brain_60-1": {
+ "class": "brain_60"
+ },
"brain_8-1": {
"class": "brain_8"
},
@@ -2241,6 +2305,9 @@
"cardio_13-1": {
"class": "cardio_13"
},
+ "cardio_16-1": {
+ "class": "cardio_16"
+ },
"cardio_18-1": {
"class": "cardio_18"
},
@@ -2349,6 +2416,9 @@
"digestive_12-1": {
"class": "digestive_12"
},
+ "digestive_13-1": {
+ "class": "digestive_13"
+ },
"digestive_17-1": {
"class": "digestive_17"
},
@@ -2562,6 +2632,9 @@
"digestive_89-1": {
"class": "digestive_89"
},
+ "digestive_9-1": {
+ "class": "digestive_9"
+ },
"digestive_90-1": {
"class": "digestive_90"
},
@@ -2571,8 +2644,65 @@
"digestive_92-1": {
"class": "digestive_92"
},
- "digestive_9-1": {
- "class": "digestive_9"
+ "digestive_93-1": {
+ "class": "digestive_93"
+ },
+ "digestive_94-1": {
+ "class": "digestive_94"
+ },
+ "digestive_95-1": {
+ "class": "digestive_95"
+ },
+ "digestive_96-1": {
+ "class": "digestive_96"
+ },
+ "digestive_97-1": {
+ "class": "digestive_97"
+ },
+ "digestive_98-1": {
+ "class": "digestive_98"
+ },
+ "digestive_99-1": {
+ "class": "digestive_99"
+ },
+ "digestive_100-1": {
+ "class": "digestive_100"
+ },
+ "digestive_101-1": {
+ "class": "digestive_101"
+ },
+ "digestive_102-1": {
+ "class": "digestive_102"
+ },
+ "digestive_103-1": {
+ "class": "digestive_103"
+ },
+ "digestive_104-1": {
+ "class": "digestive_104"
+ },
+ "digestive_105-1": {
+ "class": "digestive_105"
+ },
+ "digestive_106-1": {
+ "class": "digestive_106"
+ },
+ "digestive_107-1": {
+ "class": "digestive_107"
+ },
+ "digestive_108-1": {
+ "class": "digestive_108"
+ },
+ "digestive_109-1": {
+ "class": "digestive_109"
+ },
+ "digestive_110-1": {
+ "class": "digestive_110"
+ },
+ "digestive_111-1": {
+ "class": "digestive_111"
+ },
+ "digestive_112-1": {
+ "class": "digestive_112"
},
"endocrine_1-1": {
"class": "endocrine_1"
@@ -2740,6 +2870,12 @@
"reproductive_31-1": {
"class": "reproductive_31"
},
+ "reproductive_32-1": {
+ "class": "reproductive_32"
+ },
+ "reproductive_33-1": {
+ "class": "reproductive_33"
+ },
"respiratory_10-1": {
"class": "respiratory_10"
},
@@ -3575,6 +3711,18 @@
"type": "ganglion",
"class": "auto-hide"
},
+ "plexus_21-1": {
+ "models": "UBERON:8410063",
+ "name": "myenteric nerve plexus of small intestine",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "plexus_24-1": {
+ "models": "ILX:0797430",
+ "name": "nerve plexus along the left precaval vein",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
"label_5-1": {
"class": "label_5"
},
@@ -3644,6 +3792,30 @@
"label_27-1": {
"class": "label_27"
},
+ "label_28-1": {
+ "class": "label_28"
+ },
+ "label_29-1": {
+ "class": "label_29"
+ },
+ "label_30-1": {
+ "class": "label_30"
+ },
+ "label_31-1": {
+ "class": "label_31"
+ },
+ "label_32-1": {
+ "class": "label_32"
+ },
+ "label_33-1": {
+ "class": "label_33"
+ },
+ "label_34-1": {
+ "class": "label_34"
+ },
+ "label_35-1": {
+ "class": "label_35"
+ },
"CNVII_c": {
"type": "nerve",
"models": "UBERON:0001647"
@@ -4017,6 +4189,18 @@
"type": "nerve",
"models": "UBERON:0008810"
},
+ "trigeminal_c": {
+ "type": "nerve",
+ "models": "UBERON:0001645"
+ },
+ "penile_cavernous_c": {
+ "type": "nerve",
+ "models": "ILX:0793807"
+ },
+ "cardiac_interganglionic_c": {
+ "type": "nerve",
+ "models": "ILX:0796679"
+ },
"superior_laryngeal_19": {
"type": "nerve"
},
diff --git a/proxy_features.json b/proxy_features.json
index bd0ca10..6935695 100644
--- a/proxy_features.json
+++ b/proxy_features.json
@@ -12,5 +12,26 @@
"proxies": [
"UBERON:0002844"
]
+ },
+ {
+ "feature": "UBERON:0004170",
+ "name": "Spinal cord ventral commissure",
+ "proxies": [
+ "UBERON:0006469"
+ ]
+ },
+ {
+ "feature": "UBERON:0002261",
+ "name": "dorsal root of spinal cord",
+ "proxies": [
+ "ILX:0786747"
+ ]
+ },
+ {
+ "feature": "UBERON:0002014",
+ "name": "inferior hypogastric nerve plexus",
+ "proxies": [
+ "UBERON:0016508"
+ ]
}
]